数据库实体类

pom.xml

@@ -1,110 +1,107 @@
 <?xml version="1.0" encoding="UTF-8"?>
-
-<project xmlns="http://maven.apache.org/POM/4.0.0"
-		 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
          xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
     <modelVersion>4.0.0</modelVersion>
-	<groupId>me.lensfrex</groupId>
+    <parent>
+        <groupId>org.springframework.boot</groupId>
+        <artifactId>spring-boot-starter-parent</artifactId>
+        <version>2.7.1</version>
+        <relativePath/> <!-- lookup parent from repository -->
+    </parent>
+    <groupId>net.lensfrex</groupId>
     <artifactId>dscape-server</artifactId>
     <version>0.0.1-dev</version>
     <name>dscape-server</name>
-	<packaging>jar</packaging>
-
+    <description>dscape-server</description>
     <properties>
-		<start-class>me.lensfrex.dscape.api.v1.ServerMain</start-class>
-		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-		<maven.compiler.target>1.8</maven.compiler.target>
-		<maven.compiler.source>1.8</maven.compiler.source>
-		<junit.version>5.8.1</junit.version>
-
+        <java.version>1.8</java.version>
     </properties>
-	<parent>
+    <dependencies>
+        <dependency>
             <groupId>org.springframework.boot</groupId>
-		<artifactId>spring-boot-starter-parent</artifactId>
+            <artifactId>spring-boot-starter</artifactId>
             <version>2.7.0</version>
-		<relativePath/>
-	</parent>
+        </dependency>
 
-	<dependencies>
         <dependency>
-			<groupId>javax.servlet</groupId>
-			<artifactId>javax.servlet-api</artifactId>
-			<version>4.0.1</version>
-			<scope>provided</scope>
+            <groupId>org.springframework.boot</groupId>
+            <artifactId>spring-boot-starter-test</artifactId>
+            <scope>test</scope>
         </dependency>
 
-		<!-- https://mvnrepository.com/artifact/com.google.code.gson/gson -->
         <dependency>
-			<groupId>com.google.code.gson</groupId>
-			<artifactId>gson</artifactId>
-			<version>2.9.0</version>
+            <groupId>org.springframework.boot</groupId>
+            <artifactId>spring-boot-starter-web</artifactId>
         </dependency>
 
-		<!-- https://mvnrepository.com/artifact/org.mindrot/jbcrypt -->
         <dependency>
-			<groupId>org.mindrot</groupId>
-			<artifactId>jbcrypt</artifactId>
-			<version>0.4</version>
+            <groupId>com.baomidou</groupId>
+            <artifactId>mybatis-plus-boot-starter</artifactId>
+            <version>3.5.2</version>
         </dependency>
 
         <dependency>
-			<groupId>io.jsonwebtoken</groupId>
-			<artifactId>jjwt-api</artifactId>
-			<version>0.11.5</version>
+            <groupId>org.mariadb.jdbc</groupId>
+            <artifactId>mariadb-java-client</artifactId>
+            <version>3.0.5</version>
         </dependency>
+
+        <!-- https://mvnrepository.com/artifact/com.alibaba/druid -->
         <dependency>
-			<groupId>io.jsonwebtoken</groupId>
-			<artifactId>jjwt-impl</artifactId>
-			<version>0.11.5</version>
-			<scope>runtime</scope>
+            <groupId>com.alibaba</groupId>
+            <artifactId>druid</artifactId>
+            <version>1.2.11</version>
         </dependency>
         <dependency>
-			<groupId>io.jsonwebtoken</groupId>
-			<artifactId>jjwt-gson</artifactId> <!-- or jjwt-gson if Gson is preferred -->
-			<version>0.11.5</version>
-			<scope>runtime</scope>
+            <groupId>com.alibaba</groupId>
+            <artifactId>druid-spring-boot-starter</artifactId>
+            <version>1.2.11</version>
         </dependency>
 
-		<!-- https://mvnrepository.com/artifact/org.mybatis/mybatis -->
         <dependency>
-			<groupId>org.mybatis</groupId>
-			<artifactId>mybatis</artifactId>
-			<version>3.5.9</version>
+            <groupId>com.fasterxml.jackson.core</groupId>
+            <artifactId>jackson-core</artifactId>
+            <version>2.13.3</version>
         </dependency>
-
-		<!-- https://mvnrepository.com/artifact/org.mariadb.jdbc/mariadb-java-client -->
         <dependency>
-			<groupId>org.mariadb.jdbc</groupId>
-			<artifactId>mariadb-java-client</artifactId>
-			<version>3.0.4</version>
+            <groupId>com.fasterxml.jackson.core</groupId>
+            <artifactId>jackson-databind</artifactId>
+            <version>2.13.3</version>
+        </dependency>
+        <dependency>
+            <groupId>com.fasterxml.jackson.core</groupId>
+            <artifactId>jackson-annotations</artifactId>
+            <version>2.13.3</version>
         </dependency>
 
         <dependency>
-			<groupId>commons-io</groupId>
-			<artifactId>commons-io</artifactId>
-			<version>2.11.0</version>
+            <groupId>commons-cli</groupId>
+            <artifactId>commons-cli</artifactId>
+            <version>1.5.0</version>
         </dependency>
 
         <dependency>
-			<groupId>org.springframework.boot</groupId>
-			<artifactId>spring-boot-starter-web</artifactId>
-			<exclusions>
-				<exclusion>
-					<groupId>org.springframework.boot</groupId>
-					<artifactId>spring-boot-starter-tomcat</artifactId>
-				</exclusion>
-			</exclusions>
+            <groupId>io.jsonwebtoken</groupId>
+            <artifactId>jjwt-api</artifactId>
+            <version>0.11.5</version>
         </dependency>
         <dependency>
-			<groupId>org.springframework.boot</groupId>
-			<artifactId>spring-boot-starter-test</artifactId>
-			<scope>test</scope>
+            <groupId>io.jsonwebtoken</groupId>
+            <artifactId>jjwt-impl</artifactId>
+            <version>0.11.5</version>
         </dependency>
         <dependency>
-			<groupId>org.springframework.boot</groupId>
-			<artifactId>spring-boot-starter-jetty</artifactId>
-			<scope>compile</scope>
+            <groupId>io.jsonwebtoken</groupId>
+            <artifactId>jjwt-jackson</artifactId>
+            <version>0.11.5</version>
         </dependency>
+
+        <dependency>
+            <groupId>org.mindrot</groupId>
+            <artifactId>jbcrypt</artifactId>
+            <version>0.4</version>
+        </dependency>
+
     </dependencies>
 
     <build>
@@ -115,4 +112,5 @@
             </plugin>
         </plugins>
     </build>
+
 </project>

src/main/java/net/lensfrex/dscape/ServerMain.java

@@ -1,10 +1,12 @@
-package me.lensfrex.dscape.api.v1;
+package net.lensfrex.dscape;
 
+import org.mybatis.spring.annotation.MapperScan;
 import org.springframework.boot.SpringApplication;
 import org.springframework.boot.autoconfigure.SpringBootApplication;
 import org.springframework.boot.web.servlet.support.SpringBootServletInitializer;
 
 @SpringBootApplication
+@MapperScan("net.lensfrex.dscape.dao.mappers")
 public class ServerMain extends SpringBootServletInitializer {
 
 	public static void main(String[] args) {

src/main/java/net/lensfrex/dscape/dao/PatientDataDao.java

@@ -0,0 +1,12 @@
+/*
+ * Coded by lensfrex.
+ */
+
+/*
+ * Coded by lensfrex.
+ */
+
+package net.lensfrex.dscape.dao;
+
+public class PatientDataDao {
+}

src/main/java/net/lensfrex/dscape/dao/UserBasicDao.java

@@ -0,0 +1,5 @@
+package net.lensfrex.dscape.dao;
+
+public class UserBasicDao {
+
+}

src/main/java/net/lensfrex/dscape/dao/mappers/PatientDataMapper.java

@@ -0,0 +1,12 @@
+/*
+ * Coded by lensfrex.
+ */
+
+package net.lensfrex.dscape.dao.mappers;
+
+import com.baomidou.mybatisplus.core.mapper.BaseMapper;
+import net.lensfrex.dscape.domain.PatientData;
+
+public interface PatientDataMapper extends BaseMapper<PatientData> {
+
+}

src/main/java/net/lensfrex/dscape/dao/mappers/UserBasicMapper.java

@@ -0,0 +1,10 @@
+package net.lensfrex.dscape.dao.mappers;
+
+import com.baomidou.mybatisplus.core.mapper.BaseMapper;
+import net.lensfrex.dscape.domain.user.UserBasic;
+import org.springframework.stereotype.Repository;
+
+@Repository
+public interface UserBasicMapper extends BaseMapper<UserBasic> {
+
+}

src/main/java/net/lensfrex/dscape/domain/PatientData.java

@@ -0,0 +1,139 @@
+package net.lensfrex.dscape.domain;
+
+import java.util.Date;
+
+public class PatientData {
+
+    /**
+     * 患者数据id
+     */
+    private int id;
+
+    /**
+     * 病人id
+     */
+    private int pid;
+
+    /**
+     * ctDNA长度
+     */
+    private int ctDNALength;
+
+    /**
+     * 甲基化位点数
+     */
+    private int cpg;
+
+    /**
+     * 是否为hcc
+     */
+    private boolean hccStatus;
+
+    /**
+     * 通过推断得出的hcc状态
+     */
+    private boolean hccInferStatus;
+
+    /**
+     * create_time
+     */
+    private Date createTime;
+
+    /**
+     * edit_time
+     */
+    private Date editTime;
+
+    /**
+     * delete
+     */
+    private boolean delete;
+
+    public PatientData() {}
+
+    public int getId() {
+        return id;
+    }
+
+    public void setId(int id) {
+        this.id = id;
+    }
+
+    public int getPid() {
+        return pid;
+    }
+
+    public void setPid(int pid) {
+        this.pid = pid;
+    }
+
+    public int getCtDNALength() {
+        return ctDNALength;
+    }
+
+    public void setCtDNALength(int ctDNALength) {
+        this.ctDNALength = ctDNALength;
+    }
+
+    public boolean isHccStatus() {
+        return hccStatus;
+    }
+
+    public void setHccStatus(boolean hccStatus) {
+        this.hccStatus = hccStatus;
+    }
+
+    public boolean isHccInferStatus() {
+        return hccInferStatus;
+    }
+
+    public void setHccInferStatus(boolean hccInferStatus) {
+        this.hccInferStatus = hccInferStatus;
+    }
+
+    public boolean isDelete() {
+        return delete;
+    }
+
+    public void setDelete(boolean delete) {
+        this.delete = delete;
+    }
+
+    public int getCpg() {
+        return cpg;
+    }
+
+    public void setCpg(int cpg) {
+        this.cpg = cpg;
+    }
+
+    public Date getCreateTime() {
+        return createTime;
+    }
+
+    public void setCreateTime(Date createTime) {
+        this.createTime = createTime;
+    }
+
+    public Date getEditTime() {
+        return editTime;
+    }
+
+    public void setEditTime(Date editTime) {
+        this.editTime = editTime;
+    }
+
+    @Override
+    public String toString() {
+        return "PatientData{" + "id=" + id +
+                ", pid=" + pid +
+                ", ctDNALength=" + ctDNALength +
+                ", cpg=" + cpg +
+                ", hccStatus=" + hccStatus +
+                ", hccInferStatus=" + hccInferStatus +
+                ", createTime=" + createTime +
+                ", editTime=" + editTime +
+                ", delete=" + delete +
+                '}';
+    }
+}

src/main/java/net/lensfrex/dscape/domain/user/UserBasic.java

@@ -0,0 +1,62 @@
+package net.lensfrex.dscape.domain.user;
+
+public class UserBasic {
+    private String uid;
+    private String userName;
+    private String password;
+    private UserStatus status;
+    private UserRole role;
+
+    public String getUid() {
+        return uid;
+    }
+
+    public void setUid(String uid) {
+        this.uid = uid;
+    }
+
+    public String getUserName() {
+        return userName;
+    }
+
+    public void setUserName(String userName) {
+        this.userName = userName;
+    }
+
+    public String getPassword() {
+        return password;
+    }
+
+    public void setPassword(String password) {
+        this.password = password;
+    }
+
+    public UserRole getRole() {
+        return role;
+    }
+
+    public void setRole(UserRole role) {
+        this.role = role;
+    }
+
+    public UserStatus getStatus() {
+        return status;
+    }
+
+    public void setStatus(UserStatus status) {
+        this.status = status;
+    }
+
+    @Override
+    public String toString() {
+        final StringBuffer sb = new StringBuffer("UserBasic{");
+        sb.append("uid='").append(uid).append('\'');
+        sb.append(", userName='").append(userName).append('\'');
+        sb.append(", password='").append(password).append('\'');
+        sb.append(", status=").append(status);
+        sb.append(", role=").append(role);
+        sb.append('}');
+        return sb.toString();
+    }
+}
+

src/main/java/net/lensfrex/dscape/domain/user/UserRole.java

@@ -0,0 +1,17 @@
+package net.lensfrex.dscape.domain.user;
+
+import com.baomidou.mybatisplus.annotation.EnumValue;
+
+public enum UserRole {
+    ADMIN(1, "admin"), NORMAL_USER(0, "normal");
+
+    @EnumValue
+    private final int role;
+
+    private final String desc;
+
+    UserRole(int role, String desc) {
+        this.role = role;
+        this.desc = desc;
+    }
+}

src/main/java/net/lensfrex/dscape/domain/user/UserStatus.java

@@ -0,0 +1,15 @@
+package net.lensfrex.dscape.domain.user;
+
+import com.baomidou.mybatisplus.annotation.EnumValue;
+
+public enum UserStatus {
+
+    NORMAL(0), BANNED(1), DELETED(2);
+
+    @EnumValue
+    private final int status;
+
+    UserStatus(int status) {
+        this.status = status;
+    }
+}

src/main/java/net/lensfrex/dscape/web/controllers/Index.java

@@ -0,0 +1,35 @@
+package net.lensfrex.dscape.web.controllers;
+
+import net.lensfrex.dscape.dao.mappers.UserBasicMapper;
+import net.lensfrex.dscape.domain.user.UserBasic;
+import net.lensfrex.dscape.domain.user.UserRole;
+import org.springframework.web.bind.annotation.RequestMapping;
+import org.springframework.web.bind.annotation.RequestMethod;
+import org.springframework.web.bind.annotation.RestController;
+
+import javax.annotation.Resource;
+
+@RestController
+public class Index {
+
+    @Resource
+    private UserBasicMapper userBasicMapper;
+
+    @RequestMapping(value = "/", method = RequestMethod.GET)
+    public String returnIndexMessage() {
+
+
+            System.out.println("------test------");
+//        List<UserBasic> userBasicList = userBasicMapper.selectList(null);
+
+            UserBasic userBasic = new UserBasic();
+
+            userBasic.setUserName("lensfrex");
+            userBasic.setPassword("passwd");
+            userBasic.setUid("uid");
+            userBasic.setRole(UserRole.ADMIN);
+
+            System.out.println(userBasicMapper.insert(userBasic));
+        return "ヾ(￣▽￣)";
+    }
+}

src/main/resources/application.yml

@@ -1 +1,22 @@
+server:
+  address: 127.0.0.1
+  port: 6480
+  http2:
+    enabled: false
+  ssl:
+    enabled: false
+    trust-certificate:
+    trust-certificate-private-key:
 
+spring:
+  datasource:
+    driver-class-name: org.mariadb.jdbc.Driver
+    url: jdbc:mariadb://localhost:33060/dscape?useUnicode=true&characterEncoding=UTF-8&useSSL=false&serverTimezone=Asia/Shanghai
+    username: "dscape_user"
+    password: 
+
+
+mybatis-plus:
+  configuration:
+    log-impl: org.apache.ibatis.logging.stdout.StdOutImpl
+    default-enum-type-handler: org.apache.ibatis.type.EnumOrdinalTypeHandler